报告人：马渐新 教授  

　　　　报告题目：大豆复制基因的保守与创新性进化  

　　　　报告时间：2016年7月19日 （星期二）下午14:00  

　　　　报告地点：长春区综合楼5楼大会议室 （哈区视频）  

　　　　欢迎广大师生踊跃参加！   

　　　　                                                            2016年7月18日  

　　报告人简介： 

　　　　马渐新，美国普渡大学教授，长期从事植物基因组学和应用遗传学方面的研究工作，在 Nature, Science, Nature Genetics等国际顶级杂志发表多篇研究论文。  

　　　　https://ag.purdue.edu/agry/directory/Pages/maj.aspx  

　　　　代表性论文：  

　　Liu, Y., Zhang, D., Ping, J., Li, S., Chen, Z., and Ma, J. 2016. Innovation of a Regulatory Mechanism Modulating Semi-determinate Stem Growth through Artificial Selection in Soybean. PLOS Genet., 12: e1005818. 

　　Ping, J., Fitzgerald, J.C., Zhang, C., Lin, F., Bai, Y., Wang, D., Aggarwal, R., Rehman, M., Crasta, O., and Ma J., 2016. Identification and molecular mapping of Rps11, a novel gene conferring resistance to Phytophthora sojae in soybean, Theor. Appl. Genet. 129: 445-451.？ 

　　Sun, L., Miao, Z., Cai, C. Zhang, D., Zhao, M., Wu, Y., Zhang, X., Swarm., S.A., Zhou, L., Zhang, Z.J., Nelson, R.L., and Ma, J.* 2015. GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean. Nat. Genet. 47: 939-943. 

　　Zhao, M., Meyers, B.C., Cai, C., Xu, W., and Ma, J. 2015. Evolutionary Patterns and Co-evolutionary Consequences of MIRNA Genes and MicroRNA Targets Triggered by Multiple Mechanisms of Genomic Duplications in Soybean. Plant Cell, 27: 546-562.  

　　Zhao M. , Zhai J., Lin F., Li L., Cai C., Shreve J., Thimmapuram J., Hughes T.J., Meyers B.C., and Ma, J. 2015. Coordination of microRNAs, phasiRNAs, and NB-LRR genes in immune responses: insights from analyses of soybean Rps gene near-isogenic lines. Plant Genome, 8: 10.3835. 

　　Wang, Z., Zhou, Z., Liu, Y ., Shen, Y., Liu, T., Ji, Li, Q., Wu, M., Ma, J., and Tian, Z. 2015. Functional evolution of phosphatidylethanolamine-binding proteins (PEBPs) in soybean and Arabidopsis. Plant Cell 26: 996-1008. 

　　Li, Y., Zhou, G., Ma, J., Jiang, W., Jin, L., Zhang, Z., Guo, Y., Zhang, J., Sui, Y., … (many authors), and Qiu, L. 2014. A pan-genome of wild soybean provides insights into evolution, diversity and domestication of soybean. Nat. Biotech., 32:1045-1054. 

　　Chalhoub, B., Denoeud, F., Liu, S., Zhou, Y., Zhao, M. ^？, Ma, J., (many others), and Wincker, P. 2014. Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome. Science, 345: 950-953.  

　　Ping, J., Liu, Y., Sun, L., Zhao, M.^？ Lin, F., Sui, Y., She, M., Nelson, R.L., Clemente, T., Specht, J., and Ma, J. 2014. Dt2 is an APETALA1-like MADS-domain factor gene that controls semi-determinacy in soybean. Plant Cell, 26: 2831-2842.  

　　Cai, C. Xiao, J., Zhao, C, and Ma, J. 2014. Sequence analysis of the coat protein gene of Chinese SMV strain SC7 and comparison with those of SMV strains from the US. Chn. J. Virology 30: 489-494.  

　　Liu, S., Liu, Y., Yang, X., Tong, C., Edwards, D., Isobel, P., Zhao, M., Ma, J., … (many authors), and Paterson, A. 2014. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat. Comm. 10.1038/ncomms4930. 

　　Lin, F., Zhao, M., Baumann, D.D., Ping, J., Sun, L., Liu, Y., Zhang, Biao, Tang, Z., Hughes, E., Doerge, .W., Hughes, T.J., and Ma, J.  2014. Molecular response to the pathogen Phytophthora sojae among ten soybean near isogenic lines revealed by comparative transcriptomics. BMC Genomics 15: 18. 

　　Zhao, M., Du, J., Lin, F., Tong, C., Yu, J., Huang, S. Wang, X. Liu, S.^, Ma, J. 2013. Shifts in evolutionary rate and intensity of purifying selection between two Brassica genomes revealed by analyses of orthologous retrotransposons and relics of a whole genome triplication. Plant J. 76: 211-222.？ 

　　Zhao, M., Du, J., Lin, F., Tong, C., Yu, J., Huang, S. Wang, X. Liu, S. Ma, J. 2013. Shifts in evolutionary rate and intensity of purifying selection between two Brassica genomes revealed by analyses of orthologous retrotransposons and relics of a whole genome triplication. Plant J. 10.1111/tpj.12291. 

　　Zhao, M., Zhang, B., Liu, S.-Y., and Ma, J. 2013. Transposon expression and potential effect on gene regulation in the Brassica rapa and Brassica oleracea genomes. Hereditas 35: 1014-1022. 

　　Zhao, M., and Ma, J. 2013. Co-evolution of plant LTR-retrotransposons and their host genomes. Protein Cell 4: 493-501. 

　　Motamayor. J.C., Mockaitis, K., Schmutz, J., Haiminen, N., Livingstone, D. 3rd, Cornejo, O., Findley, S.D., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B.E., Stack, J.C., Feltus, F.A., Mustiga, G.M., Amores, F., Phillips, W., Marelli, J.P., May, G.D., Shapiro, H., Ma, J., Bustamante, C.D., Schnell, R.J., Main, D., Gilbert, D., Parida, L., Kuhn, D.N. 2013. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol. 14: R53. 

　　Lin, F., Zhao, M., Ping, J., Johnson, A., Zhang, B., Abney, T.S., Hughes, T.J., and Ma, J. 2013. Molecular mapping of two genes conferring resistance to Phytophthora sojae in a soybean landrace PI 567139B. Theor. Appl. Genet. 126: 2177-2185. 

　　Li, Y.H., Zhao, S.C., Ma, J.X., Li, D., Yan, L., Li, J., Qi, X.T., Guo, X.S., Zhang, L., He, W.M., Chang, R.Z., Liang, Q.S., Guo, Y., Ye, C., Wang, X.B., Tao, Y., Guan, R.X., Wang, J.Y., Liu, Y.L., Jin, L.G., Zhang, X.Q., Liu, Z.X., Zhang, L.J., Chen, J., Wang, K.J., Nielsen, R., Li, R.Q., Chen, P.Y., Li, W.B., Reif, J.C., Purugganan, M., Wang, J., Zhang, M.C., Wang, J., Qiu, L.J. 2013. Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics 14: 579. 

　　Ma, J., 2013. Retrotransposons. In: Stanley, M., and Kelly, H., (eds). Brenner’s Encyclopedia of Genetics, 2^nd edition, Vol. 6., San Diego, Academic Press, p. 208-210. 

　　Yin, H., Liu, J., Xu, Y., Liu, X., Zhang, S., Ma, J., Du, J. 2013. TARE1, a mutated copia-Like LTR retrotransposon followed by recent massive amplification in tomato. PLoS One 8: e68587. 

　　Tian, Z., Zhao, M., She, M., Du, J., Cannon, S.B., Liu, X., Xu, X., Qi, X., Li, M.W., Lam, H.M., and Ma, J. 2012. Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean. Plant Cell. 24: 4422-4436. 

　　Du, J., Tian, Z., Sui, Y., Zhao, M., Song, Q., Cannon, S.B., Cregan, P., and Ma, J. 2012. Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the palaeopolyploid soybean (Glycine max (L.). Plant Cell 24: 21-32  

　　Zhuang, X., K？llner, T., Zhao, N., Li, G., Jiang, Y., Zhu, L., Ma, J. Degenhardt, J. Chen, F.  2012. Dynamic evolution of herbivore-induced sesquiterpene biosynthesis in sorghum and related grass crops. Plant J. 69: 70-80 

　　Li, X., Zhu, C., Lin, Z., Wu, Y., Zhang, D., Ma, J., Song, W., Bai., G., Muehlbauer, G., Scanlon, M., Zhang., M., and Yu,, J. 2011. Conservative boundaries of chromosome size variation in Eukaryotes. Mol. Bio. Evol. 28: 1901-1911  

　　Tian, Z., Yu.Y., Lin, F., Yu, Y.-S., SanMiguel, P., Wing, R.A., McCouch, S., Ma, J.*, and Jackson, S.A.* 2011. Exceptional lability of a genomic complex of rice and its close relatives. BMC Genomics, 12: 142 (*co-corresponding)